Changes needed for GFS Update 2017?

[meteoadriatic]

Maybe but not very probably. I would guess that your setup is too "risky". Did you take a detailed look into error logs? CFL violations or something like that?

[meteo60]

No I didn't see anything like that in log files.
Sometimes I've already seen runs that apparently crash because of GFS data but it's rare and even rarer two following

[rodi]

Hello
I found on this topic the following link http://gamma.meteoadriatic.net/test/uems_install.pl.gz
to download the installer for new version of UEMS but gives this error:

Code: Select all

rox-desktop:~/uems_install.pl> uems_install.pl --install 15.99.5
Can't exec "lscpu": File o directory non esistente at uems_install.pl line 3140.
Can't exec "whereis": File o directory non esistente at uems_install.pl line 5164.
Use of uninitialized value $util in scalar chomp at uems_install.pl line 5164.
Use of uninitialized value $util in -s at uems_install.pl line 5165.
Can't exec "whereis": File o directory non esistente at uems_install.pl line 5164.
Use of uninitialized value $util in scalar chomp at uems_install.pl line 5164.
Use of uninitialized value $util in -s at uems_install.pl line 5165.


  Greetings irrefutably intelligent and devastatingly good-looking UEMS user!

    Welcome to the NWS SOO Science and Training Resource Center (SOO/STRC) Unified
    Environmental Modeling System (UEMS) installation and update routine.
    
    Phew! That's more than a mouthful.


    *  Checking http connection to ems2.comet.ucar.edu   - It's Alive!

    *  Connecting to ems2.comet.ucar.edu -sh: wget: comando non trovato
  Failed

sh: wget: comando non trovato

        !  There was a problem retrieving information from ems2.comet.ucar.edu

  Our relationship is off to a rocky start. I need some jewelry!

I confirm that wget and curl are installed .
I'm using DEBIAN 9.
Have you suggestions?
Thanks in advance

[rodi]

Hi
the previous problem is solved after log out and re-log on terminal but when I try to run domain wizard appears the following error:

Code: Select all

/usr1/uems/runs/arw1/static/geogrid.log is Not Found;
	***CANNOT continue request***
	Attempt number 1 to find and read geogrid.log


/usr1/uems/runs/arw1/static/geogrid.log is Not Found;
	***CANNOT continue request***
	Attempt number 2 to find and read geogrid.log


/usr1/uems/runs/arw1/static/geogrid.log is Not Found;
	***CANNOT continue request***
	Attempt number 3 to find and read geogrid.log

 After three attempts to find geogrid.log ...now giving up.


- - - - - - -  List of Output  - - - - - - -

List of geogrid.exe files found
	No geo_* files were found.

and this is the dwiz.log

Code: Select all

INFO: Mac or Linux computer detected. Setting Mac/Linux fonts
INFO: JVM memory=630128640
INFO: WRF Domain Wizard version 2.82
Attempting to run ems_domain.pl...
path to ems_domain.pl: /usr1/uems/strc/ems_domain.pl
 --dwiz --rundir /usr1/uems/runs --update arw1 --core arw
Running ems_domain.pl....

  Starting UEMS Program ems_domain.pl (V15.99.5) on rox-desktop at Tue Aug  1 13:30:51 2017 UTC


    !  EMS Inspirational Message #601 - Help Me, Help You

       What, exactly, do you expect to achieve by passing such jibberish ("update")?


       "It is better to keep your mouth closed and let people think you are a fool than
       to open it and remove all doubt."
                                                                    - Mark Twain

ems_domain.pl exit code is: 1
Local
INFO: ( $EMS_UTIL/mpich2/bin/mpiexec.gf -n $OMP_NUM_THREADS /usr1/uems/bin/geogrid >& /usr1/uems/runs/arw1/static/geogrid.log ; echo $? > /usr1/uems/runs/arw1/static/geogrid.log.exitCode) &
Local
Local

Probably the error is caused by mpich2 but I've installed UEMS using the command : ./uems_install.pl --install and the program has downloaded the correct binaries.
For more info this my sysinfo log

Code: Select all

rox-desktop:/usr1/uems/strc/EMSbin> ./sysinfo


    !  Processors hath gone missing!
       
       It appears that either NCPUS (0) or CORES (0) is undefined in the
       EMS.profile file. Rather than stopping this train and pestering you do
       actually do somthing about it, I am continuing with the following values:
       
         1 PHYSICAL CPUs  - Those that you would see if you opened up the computer
       case
       
         4 CORES per CPU - Just that and not the total number of available
       processors
       
       If you don't like it then edit the EMS.conf file.
       
       It's your job. Don't make me print this message again.

  Starting UEMS Program sysinfo (V15.99.5) on rox-desktop at Tue Aug  1 13:40:37 2017 UTC



     *  Gathering information for localhost rox-desktop
        ------------------------------------------------------------------

          System Information for rox-desktop
          
              System Date           : Tue Aug  1 13:40:38 2017 UTC
              System Hostname       : rox-desktop
              System Address        : 127.0.1.1
          
              System OS             : Linux
              OS Kernel             : 4.9.0-3-amd64
              Kernel Type           : x86_64
              Linux Distribution    : Debian GNU/Linux 9.1 (stretch)
          
          Network Interface Information for rox-desktop
          
              Network Interface     : sh
              Interface Address     : None Assigned
              Address Resolves to   : Nothing
              Interface State       : Inactive
          
          Processor and Memory Information for rox-desktop
          
              CPU Name              : Intel(R) Core(TM) i7-4770 CPU @ 3.40GHz
              CPU Instructions      : haswell
              CPU Type              : 64-bit
              CPU Speed             : 3699.24 MHz
          
              EMS Determined Processor Count
                  Physical CPUs     : 1
                  Cores per CPU     : 4
                  Total Processors  : 4
          
              EMS.cshrc Specified Processor Count
                  Physical CPUs     : 1 
                  Cores per CPU     : 4
                  Total Processors  : 4
          
              Hyper-Threading       : Off
                
              System Memory         : 15.5 Gbytes
          
          EMS User Information for rox on rox-desktop
          
              User  ID              : 1000
              Group ID              : 1000
              Home Directory        : /home/rox
              Home Directory Mount  : Local
              User Shell            : /bin/bash
              Shell Installed       : Yes
              Shell Login Files     : 
              EMS.cshrc Sourced     : 
              EMS.cshrc Port Range  : None Defined
          
          EMS Installation Information for rox-desktop
          
              EMS Release           : 15.99.5,WRF3.7.1
              EMS Home Directory    : /usr1/uems
              EMS Home Mount        : Local
              EMS User ID           : 1000
              EMS Group ID          : 1000
              EMS Binaries          : x64
          
              EMS Run Directory     : /usr1/uems/runs
              EMS Run Dir Mount     : Local
              EMS Run Dir User ID   : 1000
              EMS Run Dir Group ID  : 1000
          
              Run Dir Avail Space   : 690.54 Gb
              Run Dir Space Used    : 16%
          
              EMS Util Directory    : /usr1/uems/util


    Your awesome EMS sysinfo party is complete - Tue Aug  1 13:40:38 2017 UTC

  As Shields and Yarnell loved to gesticulate: "Think Globally, Model Locally!"

I tested uems 5 month ago on the same machine under Linux-Mint 17 and it worked correctly and now under Debian 9 gives these problems.
Thanks in advance for any suggestion.
Rodi

[meteo60]

I have the same error but it's not a problem for me to create domain after in command line, put namelist.wps and localize it

[rodi]

Hi meteo60
I've the same error under wrfems 3.4, I tried your suggestion and the problem is solved but under UEMS the problem persist.
When I lanch ems_domain.pl appears this error:

Code: Select all

rox-desktop:/usr1/uems/strc> ems_domain.pl --localize arw1

  Starting UEMS Program ems_domain.pl (V15.99.5) on rox-desktop at Wed Aug  2 08:23:40 2017 UTC


    *  Localizing "arw1" domain - /usr1/uems/runs/arw1

       Here is some information about your domain:

          Primary Domain
            Projection          : lambert
            Standard Longitude  : 9.714 Degrees
            True Latitude 1     : 45.249 Degrees
            True Latitude 2     : 45.249 Degrees
            Reference Latitude  : 45.249 Degrees
            Reference Longitude : 9.714 Degrees
            Grid NX x NY        : 100 x 87
            Grid Spacing        : 6.00 Kilometers
            Geog Dset Res       : 2m

    *  Burn'n up 2 processors to localize your domain. Please ignore the smoke  - Success

       Localization Complete - Model Strong!


    *  Domain "arw1" appears to be in need of some refreshment (My work is never done!):

          Refreshing files in arw1/conf/ems_auto (configuration retained):                                                                                                                                        
                                                                                                                                                                                                                  
            MISSING : Configuration file   - ems_autopost.conf                                                                                                                                                    
            MISSING : Configuration file   - ems_autorun.conf                                                                                                                                                     
                                                                                                                                                                                                                  
          Refreshing files in arw1/conf/ems_run (configuration retained):                                                                                                                                         
                                                                                                                                                                                                                  
            MISSING : Configuration file   - run_afwaout.conf                                                                                                                                                     
            MISSING : Configuration file   - run_auxhist1.conf                                                                                                                                                    
            MISSING : Configuration file   - run_dfi.conf                                                                                                                                                         
            MISSING : Configuration file   - run_dynamics.conf                                                                                                                                                    
            MISSING : Configuration file   - run_levels.conf                                                                                                                                                      
            MISSING : Configuration file   - run_lightning.conf                                                                                                                                                   
            MISSING : Configuration file   - run_namelist.conf
            MISSING : Configuration file   - run_ncpus.conf
            MISSING : Configuration file   - run_nests.conf
            MISSING : Configuration file   - run_noahmp.conf
            MISSING : Configuration file   - run_nudging.conf
            MISSING : Configuration file   - run_physics.conf
            MISSING : Configuration file   - run_real.conf
            MISSING : Configuration file   - run_restart.conf
            MISSING : Configuration file   - run_sealakes.conf
            MISSING : Configuration file   - run_timestep.conf
            MISSING : Configuration file   - run_wrfout.conf

          Refreshing files in arw1/conf/ems_post (configuration retained):

            MISSING : Configuration file   - post_bufr.conf
            MISSING : Configuration file   - post_export.conf
            MISSING : Configuration file   - post_gempak.conf
            MISSING : Configuration file   - post_grads.conf
            MISSING : Configuration file   - post_grib.conf
            MISSING : Configuration file   - post_uems.conf

          Refreshing EMSUPP control files in arw1/static (configuration saved):




          Checking paths in arw1/static/namelist.wps



    EMS Program ems_domain completed at Wed Aug  2 08:23:50 2017 UTC

  Toista perässäni: "Think Globally, Model Locally!"

Rodi

[dominic]

OK, here are the changes for NMM

http://gamma.meteoadriatic.net/tmp/NMM/

This ungrib is from WPS 3.9 with patch for new GFS, compiled statically so it should work with any system. Also, that one from Robert's update should work also in NMM but didn't tested it myself. Vtable.GFS should be placed in data/tables/vtable and METGRID.TBL.NMM in data/tables/wps

That should be all you need to change. Let me know if it works.
Ivan

Hi ivan, this is needed to activate nmm? If so, where should these files be placed?

This works for my NMM just fine. I wrote paths for tables and ungrib should go instead that one you have in bin directory.

Hi ivan

I've put the files on your ftp. The problem arises when I go to localize the domain, and I get the following error:

ERROR: Could not open GEOGRID.TBL
ERROR: Could not open GEOGRID.TBL
ERROR: ERROR: Could not open GEOGRID.TBL
ERROR: Could not open GEOGRID.TBL
ERROR: Could not open GEOGRID.TBL
Could not open GEOGRID.TBL
application called MPI_Abort(MPI_COMM_WORLD, 127) - process 0
application called MPI_Abort(MPI_COMM_WORLD, 127) - process 4
application called MPI_Abort(MPI_COMM_WORLD, 127) - process 1
application called MPI_Abort(MPI_COMM_WORLD, 127) - process 2
application called MPI_Abort(MPI_COMM_WORLD, 127) - process 3
application called MPI_Abort(MPI_COMM_WORLD, 127) - process 5

[meteo60]

Delete uems folder
recreate domain: ems_domain.pl --newdom xxxx
Send namelist.wps in static folder
Localize: ems_domain.pl --localize xxxx
It should be ok

Hi meteo60
I've the same error under wrfems 3.4, I tried your suggestion and the problem is solved but under UEMS the problem persist.
When I lanch ems_domain.pl appears this error:

[meteo60]

The problem of segfault occurred on the run of 2017080206Z and I have nothing in the logs however I have this in syslog:

Code: Select all

segfault at fffffffe0708c084 ip 0000000003759488 sp 00007ffed269d750 error 5 in wrfm_arw.exe[400000+3f78000]
segfault at fffffffe0708c084 ip 0000000003759488 sp 00007fff736935e0 error 5 in wrfm_arw.exe[400000+3f78000]
segfault at fffffffe0708c084 ip 0000000003759488 sp 00007ffc20722a10 error 5 in wrfm_arw.exe[400000+3f78000]

any idea?

[meteo60]

Ok so I am bad, the segfault error was caused by the conf/ems_run/run_real.conf file because I had returned an old version in which USE_MAXW_LEVEL and USE_TROP_LEVEL were at T whereas in the latest version 15.99.5 they must Be to F ... F as f*%$*
Be careful

But what can be the effect of this parameter on F on model performance??