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# Set the UEMS V15.99.8 environment variables
#
if [ -f /home/wrfems/uems/etc/EMS.profile ]; then
. /home/wrfems/uems/etc/EMS.profile
fiMy EMS.profile file is this:
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#!/bin/bash
#----------------------------------------------------------------------------------
#
# This file is used to define some of the environment variables for the UEMS
#
# If the UEMS was installed correctly then few changes are needed to this
# file unless you really feel it's really, really necessary.
#
# R.Rozumalski Version 16.0 - The "helping me to help myself" release
#----------------------------------------------------------------------------------
#
# The EMS variable below MUST be set correctly for everything to operate as
# advertised. At least that is the plan. Note that this parameter should have
# correctly set during installation but sometimes stuff just happens.
#
UEMS=EMSDIR ; export UEMS
if [ ! -d $UEMS ] ; then
echo "Can not find UEMS distribution -- Check location and modify uems/etc/EMS.profile"
unset UEMS
exit
fi
# We begin with some user-configurable parameters that serve the greater good of
# almost all of humanity as well as the EMS, just the way it should be.
#
# UEMS_LOCAL
#
# Setting the UEMS_LOCAL environment variable tells the UEMS that the default
# location for the EMS_RUN directory (Default: uems/runs) is to be reassigned to
# another location. You would set UEMS_LOCAL = 1 if the UEMS is being controlled
# a "UEMS administrator" but there will be multiple users creating domains and
# running simulations, such as in a classroom setting.
#
# If UEMS_LOCAL is set, then the new locations for EMS_RUN and EMS_LOGS will be
# defined by the RUNS_HOME variable below. Additionally, if the user is in
# the development group then UEMS_LOCAL will be reset to 0.
#
#UEMS_LOCAL=1 ; export UEMS_LOCAL
# RUNS_HOME
#
# In the event that UEMS_LOCAL = 1, RUNS_HOME will define the top level of the
# user's working directory, i.e., where "uems/runs" and "uems/logs" will be
# located. If UEMS_LOCAL is not defined (or 0) then RUNS_HOME will be ignored
# and $EMS_RUN and $EMS_LOGS will be assigned thier default locations. If
# UEMS_LOCAL = 1 but RUNS_HOME is not defined or invalid, then the top level
# of the user's home directory, $env(HOME), will be used.
#
# If a single large multi-user space is to be used for running the UEMS, it is
# recommended that RUNS_HOME be set to something like "<path to space>/$env(USER)".
#
RUNS_HOME=$HOME ; export RUNS_HOME
# NCPUS and CORES
#
# NCPUS defines the number of physical processors on that reside locally on your
# local system. NCPUS does NOT define the total number of processors (NCPUS x cores),
# nor does it define the processors used when running the model. That assignment
# is accomplished in the run_ncpus.conf file that is part of the configuration
# files for each computational domain created. NCPUS is simply the number of
# actual CPUs that you could touch if you were to open up the computer case and
# move the large heat sinks. Most stand-alone workstations have either 1 or 2
# physical CPUs although some most exotic and expensive mainboards can support
# 8 or more but you probably don't have one of those.
# CORES defines the number of cores contained within each of those touchable CPUs.
# The description of the processor type in the /proc/cpuinfo file might include
# the number of cores such as "dual core", "Duo", "quad core", or "6-Core". If
# you read a "tri-core" or "hepta-core" then you got problems. If you really don't
# know how many cores there are on each CPU then try running the "sysinfo" command;
# otherwise, look up your CPU on that internets thing.
#
NCPUS=SYSCPUS ; export NCPUS
CORES=SYSCORES ; export CORES
# DSKCHEC
#
# Set DSKCHEC to "Yes" if you want the EMS to provide you with alerts should
# your disk space usage exceed 5% remaining (95% usage). The routine will also
# automatically terminate your simulation and provide you with a message (via email
# too) when your usage reaches 100%. The default is "Yes".
#
DSKCHEC=Yes ; export DSKCHEC
# USERS
#
# USERS provides a list of users email address that will be used to contact in the
# event of a disk space problem only (See DSKCHEC above). There is a second USERS
# parameter available in the ems_autorun.conf file for each domain that allows you
# to send email to a separate list of users in the event of a failed model run.
#
# Individual users are separated by commas without spaces. Leave USERS blank
# if you don't want mail sent for ems_autorun issues.
#
# setenv USERS user1@mailbox,user2@mailbox,user3@mailbox
#
# If this is a "UEMS_LOCAL" configured system, then either set the USERS parameter
# in the user's ~/.bash_profile or ~/.cshrc files or you can try the $USER environment
# variable in place of a hard-coded user name, i.e., setenv USERS $USER@mailbox
#
USERS= ; export USERS
# MAILEXE
#
# MAILEXE defines the routine to use when sending you informative messages or pearls
# of nonsensical wisdom, which it tends to do from time to time. Just like a fortune
# cookie that provides lottery numbers. Note that the email recipients are defined
# in the ems_autorun.conf file located in the individual domain configuration files.
#
MAILEXE=/bin/mail ; export MAILEXE
# EMS_NAWIPS
#
# The EMS includes the NAWIPS the diagnostic and display system. Just because one
# of the many mottos here at EMS world headquarters is "Giving more of what they
# need, whether they need it or not!".
#
# By default the EMS_NAWIPS setting is commented out. You may remove the '#' if you
# want to use NAWIPS.UEMS=EMSDIR ; export UEMS If you have your own NAWIPS release installed and wish to
# use it instead, you may either replace the path to the EMS provided release with
# your own or leave EMS_NAWIPS blank and set the NAWIPS environment outside this file.
#
#EMS_NAWIPS=$UEMS/util/nawips ; export EMS_NAWIPS
# HTTP_PROXY
#
# The HTTP_PROXY environment variable is used when your local network has a proxy
# server which accepts http requests on some port other then 1080. Symptoms of this
# problem would be if you are unable to connect to outside data sources via http
# when running ems_prep or ems_autorun. For most users this is not a problem, in
# which case HTTP_PROXY should be left blank. If you know this is the case for
# your system then set the HTTP_PROXY to:
#
# HTTP_PROXY = <IP address of server>:<port used>
#
# For example, if proxy server 192.168.150.10 used port 80:
#
# HTTP_PROXY = 192.168.150.10:80
#
# If the proxy server requires a user name and password
#
# HTTP_PROXY = <user>:<passwd>@<IP address>:<port used>
#
HTTP_PROXY= ; export HTTP_PROXY
# MPIEXEC_PORT_RANGE
#
# Setting MPICH_PORT_RANGE will override the default range of ports to use when communicating
# to the other hosts while using MPICH2. If you want to change the default values, simply set
# MPIEXEC_PORT_RANGE = <lowest port>:<highest port>, for example:
#
# MPIEXEC_PORT_RANGE = 50001:59999
#
# The range specified below can be overridden from the run_ncpus.conf file with the
# MPICH_PORT_RANGE parameter. Should you not do anything then MPICH2 will select the
# ports to use all by itself and you will like it. Leave commented out unless you plan
# on using it.
#
#MPIEXEC_PORT_RANGE= ; export MPIEXEC_PORT_RANGE
# FTP_PASSIVE
#
# FTP_PASSIVE specifies that all FTP transfers be done in either PASSIVE (1) or
# non PASSIVE (0) mode.
#
FTP_PASSIVE=1 ; export FTP_PASSIVE
# COMPILER
#
# If you plan on using the provided scripts to build your own executables for the UEMS,
# then set COMPILER to the compiler being used. Current options are the Portland Group
# ("PGI") or Intel ("INTEL") packages, one of which is hopefully installed on your
# system (license required) and that you have the environment variables properly set.
#
# If you do not plan on building your own executables then leave COMPILER commented
# out.
#
#COMPILER=INTEL ; export COMPILER
# ==================================================================================
# End general user-configurable options - Unless you need to change EMS_RUNS
# ==================================================================================
#
# ----------------------------------------------------------------------------------
# UEMS package environment variables - Here top level "UEMS" value is used to set
# "EMS", which, in turn defines all the other environment variables. This is
# done to avoid mashing of variables with older versions of the EMS still running
# on a system.
# ----------------------------------------------------------------------------------
#
EMS=$UEMS ; export EMS
EMS_HOME=$EMS ; export EMS_HOME
EMS_BIN=$EMS_HOME/bin ; export EMS_BIN
EMS_DATA=$EMS_HOME/data ; export EMS_DATA
EMS_STRC=$EMS_HOME/strc ; export EMS_STRC
STRC_BIN=$EMS_STRC/EMSbin ; export STRC_BIN
STRC_PREP=$EMS_STRC/EMSprep ; export STRC_PREP
STRC_RUN=$EMS_STRC/EMSrun ; export STRC_RUN
STRC_POST=$EMS_STRC/EMSpost ; export STRC_POST
STRC_AUTO=$EMS_STRC/EMSauto ; export STRC_AUTO
STRC_UTIL=$EMS_STRC/EMSutils ; export STRC_UTIL
EMS_RUN=$EMS_HOME/runs ; export EMS_RUN
EMS_LOGS=$EMS_HOME/logs ; export EMS_LOGS
if [ $UEMS_LOCAL ] ; then
# You may change these if UEMS_LOCAL is set. Notice that the default location
# is under the user's home directory; however, if there is to be an alternate
# location then use the RUNS_HOME variable to redefine the location.
#
EMS_RUN=$RUNS_HOME/uems/runs ; export EMS_RUN
EMS_LOGS=$RUNS_HOME/uems/logs ; export EMS_LOGS
# Create the directories (hopefully) if they do not exist
#
`mkdir -p $EMS_RUN >& /dev/null`
`mkdir -p $EMS_LOGS >& /dev/null`
fi
EMS_UTIL=$EMS_HOME/util ; export EMS_UTIL
EMS_DOCS=$EMS_HOME/docs ; export EMS_DOCS
EMS_CONF=$EMS_HOME/conf ; export EMS_CONF
EMS_ETC=$EMS_HOME/etc ; export EMS_ETC
EMS_UBIN=$EMS_UTIL/bin ; export EMS_UBIN
EMS_MPI=$EMS_UTIL/mpich2 ; export EMS_MPI
DATA_GEOG=$EMS_DATA/geog ; export DATA_GEOG
DATA_TBLS=$EMS_DATA/tables ; export DATA_TBLS
DW=$EMS_HOME/domwiz ; export DW
DW_BIN=$DW/bin ; export DW_BIN
DW_LIB=$DW/libs ; export DW_LIB
# For those determined to build your own UEMS
#
if [ ! $UEMS_LOCAL ] ; then
EMS_BUILD=$EMS_UTIL/UEMSbuild ; export EMS_BUILD
BUILD_SRC=$EMS_BUILD/src ; export BUILD_SRC
BUILD_LIBS=$EMS_BUILD/libs ; export BUILD_LIBS
BUILD_BIN=$EMS_BUILD/bin ; export BUILD_BIN
SRC_LIBS=$BUILD_SRC/libs ; export SRC_LIBS
SRC_UTILS=$BUILD_SRC/utils ; export SRC_UTILS
SRC_POST=$BUILD_SRC/post ; export SRC_POST
SRC_MODELS=$BUILD_SRC/models ; export SRC_MODELS
EWRF=$EMS_BUILD/src/models/wrf ; export EWRF
EWPS=$EMS_BUILD/src/models/wps ; export EWPS
EPOST=$EMS_BUILD/src/post/emsupp/src ; export EPOST
EBUFR=$EMS_BUILD/src/post/emsbufr ; export EBUFR
fi
# Set the value of OMP_NUM_THREADS to be the number of
# cores * physical cpus
#
OMP_NUM_THREADS=$(($NCPUS * $CORES)) ; export OMP_NUM_THREADS
MPSTKZ=512M ; export MPSTKZ
OMP_STACKSIZE=64M ; export OMP_STACKSIZE
MP_STACK_SIZE=$OMP_STACKSIZE ; export MP_STACK_SIZE
# use ulimit for bash
unset limits
ulimit -s unlimited
ARCH=x64 ; export ARCH
NO_STOP_MESSAGE=1 ; export NO_STOP_MESSAGE # for the PGF-compiled binaries
UEMS_MODULE=0 ; export UEMS_MODULE
# Set the GrADS environment variables
#
GADDIR=$EMS_UTIL/grads/data ; export GADDIR
GAUDFT=$EMS_UTIL/grads/data/tables ; export GAUDFT
GASCRP=$EMS_UTIL/grads/scripts ; export GASCRP
# Set the NAWIPS environment variables
#
if [ $EMS_NAWIPS ] ; then
NAWIPS=$EMS_NAWIPS ; export NAWIPS
unset EMS_NAWIPS
if [ -e "$NAWIPS/Nawips.profile" ] ; then
. $NAWIPS/Nawips.profile
fi
fi
# NCVIEW environment variables
#
UDUNITS2_XML_PATH=$EMS_UTIL/ncview/udunits/udunits2.xml ; export UDUNITS2_XML_PATH
NCVIEWBASE=$EMS_UTIL/ncview/lib ; export NCVIEWBASE
XAPPLRESDIR=$EMS_UTIL/ncview/app-defaults ; export XAPPLRESDIR
alias ncview='ncview -extra -minmax med -private -no1d'
xresources=""
if [ -d $EMS_UTIL/ncview/app-defaults ] ; then
xresources="$EMS_UTIL/ncview/app-defaults/%N"
if [ $XUSERFILESEARCHPATH ] ; then
XUSERFILESEARCHPATH=${xresources}:${XUSERFILESEARCHPATH}
else
XUSERFILESEARCHPATH=$xresources
fi
export XUSERFILESEARCHPATH
fi
# Additions to HTTP_PROXY
#
if [ $HTTP_PROXY ] ; then
http_proxy=http://$HTTP_PROXY ; export http_proxy
unset HTTP_PROXY
fi
# Set the compiler environment
#
unset COMPLC
unset COMP
if [ $COMPILER ] ; then
COMPLC=${COMPILER,,} ; export COMPLC
COMP=${COMPLC^} ; export COMP
unset COMPILER
fi
# Add Unified EMS executables and scripts to the existing path
#
PATH=".:${EMS_STRC}:${STRC_BIN}:${DW_BIN}:${EMS_BIN}:${EMS_UTIL}/grads/bin:${EMS_UTIL}/bin:${GADDIR}:${EMS_MPI}/bin:${EMS_UTIL}/ncview/bin:${EMS_UTIL}/HDFView/bin:${PATH}"
export PATH